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#!/usr/bin/python
import json
import logging
import os
import re
import traceback
from db_driver import DB_Driver_REST, DB_Driver_Base
from model.graph import Attr_Diff
from model.graph import Topo_Diff
from neo4j_util import DB_result_set
from neo4j_util import cfmt
import neo4j_util as db_util
from model.model import Link
log = logging.getLogger('rhizi')
class DB_op(object):
"""
tx wrapped DB operation possibly composing multiple DB queries
"""
def __init__(self):
self.statement_set = []
self.result_set = []
self.error_set = None
self.tx_id = None
self.tx_commit_url = None # cached from response to tx begin
def parse_tx_id(self, tx_commit_url):
m = re.search('/(?P<id>\d+)/commit$', tx_commit_url)
id_str = m.group('id')
self.tx_id = int(id_str)
def add_statement(self, query, query_params={}):
"""
add a DB query language statement
@return: statement index (zero based)
"""
s = db_util.statement_to_REST_form(query, query_params)
self.statement_set.append(s)
return len(self.statement_set)
def __iter__(self):
"""
iterate over (statement_index, statement, result, error)
where result & error are mutually exclusive
note: statement_index is zero based
TODO: handle partial iteration due to error_set being non-empty
"""
i = 0
r_set_len = len(self.result_set)
for s in self.statement_set:
r_set = None # row-set
if i < r_set_len: # support partial result recovery
r_set = DB_result_set(self.result_set[i])
yield (i, s, r_set)
i = i + 1
def parse_multi_statement_response_data(self, data):
pass
@property
def name(self):
return self.__class__.__name__
def process_result_set(self):
"""
DB op can issue complex sets of quries all at once - this helper method
assists in parsing response data from a single query.
"""
ret = []
for _, _, r_set in self:
for row in r_set:
for col in row:
ret.append(col)
return ret
class DB_composed_op(DB_op):
def __init__(self):
super(DB_composed_op, self).__init__()
self.sub_op_set = []
def __assert_false_statement_access(self):
assert False, "composed_op may not contain statements, only sub-ops"
def add_statement(self, query, query_params={}):
self.__assert_false_statement_access()
def add_sub_op(self, op):
self.sub_op_set.append(op)
def __getattribute__(self, attr):
"""
intercept 'statement_set' attr get
"""
if attr == 'statement_set':
self.__assert_false_statement_access()
return object.__getattribute__(self, attr)
def __iter__(self):
"""
iterate over sub_op_set
"""
for s_op in self.sub_op_set:
yield s_op
def process_result_set(self):
ret = []
for s_op in self:
s_result_set = s_op.process_result_set()
ret.append(s_result_set)
return ret
class DBO_cypher_query(DB_op):
"""
freeform cypher query
"""
def __init__(self, q, q_params={}):
super(DBO_cypher_query, self).__init__()
self.add_statement(q, q_params)
class DBO_topo_diff_commit(DB_composed_op):
"""
commit a Topo_Diff
"""
def __init__(self, topo_diff):
super(DBO_topo_diff_commit, self).__init__()
n_add_map = db_util.meta_attr_list_to_meta_attr_map(topo_diff.node_set_add)
l_add_map = db_util.meta_attr_list_to_meta_attr_map(topo_diff.link_set_add)
l_rm_set = topo_diff.link_set_rm
n_rm_set = topo_diff.node_set_rm
#
# [!] order critical
#
if len(n_add_map) > 0:
op = DBO_add_node_set(n_add_map)
self.add_sub_op(op)
if len(l_add_map) > 0:
op = DBO_add_link_set(l_add_map)
self.add_sub_op(op)
if len(l_rm_set) > 0:
op = DBO_rm_link_set(l_rm_set)
self.add_sub_op(op)
if len(n_rm_set) > 0:
op = DBO_rm_node_set(n_rm_set)
self.add_sub_op(op)
class DBO_attr_diff_commit(DB_op):
"""
commit a Attr_Diff
"""
def __init__(self, attr_diff):
super(DBO_attr_diff_commit, self).__init__()
for id_attr, n_attr_diff in attr_diff.type__node.items():
# TODO parameterize multiple attr removal
r_attr_set = n_attr_diff['__attr_remove']
w_attr_set = n_attr_diff['__attr_write']
assert len(r_attr_set) > 0 or len(w_attr_set) > 0
q_arr = ["match (n {id: {id}}) ",
"return n.id, n"]
q_param_set = {'id': id_attr}
if len(r_attr_set) > 0:
stmt_attr_rm = "remove " + ', '.join(['n.' + attr for attr in r_attr_set])
q_arr.insert(1, stmt_attr_rm)
if len(w_attr_set) > 0:
stmt_attr_set = "set n += {attr_set}"
q_arr.insert(1, stmt_attr_set)
q_param_set['attr_set'] = w_attr_set
q = " ".join(q_arr)
self.add_statement(q, q_param_set)
for id_attr, n_attr_diff in attr_diff.type__link.items():
pass # TODO: handl link attr_diffs
def process_result_set(self):
ret = {}
for _, _, r_set in self:
for row in r_set:
n_id, n = [v for v in row] # we expect a [n_id, n] array
ret[n_id] = n
return ret
class DBO_add_node_set(DB_op):
def __init__(self, node_map):
"""
DB op: add node set
@param node_map: node-type to node-set map
@return: set of new node DB ids
"""
super(DBO_add_node_set, self).__init__()
for q, q_param_set in db_util.gen_query_create_from_node_map(node_map):
self.add_statement(q, q_param_set)
def process_result_set(self):
id_set = []
for _, _, row_set in self:
for row in row_set:
for clo in row:
id_set.append(clo)
return id_set
class DBO_add_link_set(DB_op):
def __init__(self, link_map):
"""
@param link_map: is a link-type to link-set map - see model.link
@return: set of new node DB ids
"""
super(DBO_add_link_set, self).__init__()
for q, q_params in db_util.gen_query_create_from_link_map(link_map):
self.add_statement(q, q_params)
def process_result_set(self):
id_set = []
for _, _, r_set in self:
for row in r_set:
for col_val in row:
id_set.append(col_val)
return id_set
class DBO_load_node_set_by_DB_id(DB_op):
def __init__(self, id_set):
"""
load a set of nodes whose DB id is in id_set
@param id_set: DB node id set
@return: loaded node set or an empty set if no match was found
"""
super(DBO_load_node_set_by_DB_id, self).__init__()
q = "start n=node({id_set}) return n"
self.add_statement(q, { 'id_set': id_set})
class DBO_match_node_id_set(DB_op):
def __init__(self, filter_label=None, filter_attr_map={}):
"""
match a set of nodes by type / attr_map
@param filter_label: node type filter
@param filter_attr_map: is a filter_key to filter_value_set map of
possible attributes to match against, eg.:
{ 'id':[0,1], 'color: ['red','blue'] }
@return: a set of node DB id's
"""
super(DBO_match_node_id_set, self).__init__()
q = "match (n{filter_label}) {where_clause} return id(n)"
q = cfmt(q, filter_label="" if not filter_label else ":" + filter_label)
q = cfmt(q, where_clause=db_util.gen_clause_where_from_filter_attr_map(filter_attr_map))
q_params = filter_attr_map
self.add_statement(q, q_params)
class DBO_match_node_set_by_id_attribute(DBO_match_node_id_set):
def __init__(self, id_set):
"""
convenience op: load a set of nodes by their 'id' attribute != DB node id
"""
assert isinstance(id_set, list)
super(DBO_match_node_set_by_id_attribute, self).__init__(filter_attr_map={'id': id_set})
class DBO_load_link_set(DB_op):
def __init__(self, link_ptr_set):
"""
match a set of sets of links by source/target node id attributes
This class should be instantiated through a static factory function
@link_ptr_set link pointer set
@return: a set of loaded links
"""
super(DBO_load_link_set, self).__init__()
for l_ptr in link_ptr_set:
if not l_ptr.src_id:
q = "match ()-[r]->({id: {dst_id}}) return r"
q_params = {'dst_id': l_ptr.dst_id}
elif not l_ptr.dst_id:
q = "match ({id: {src_id}})-[r]->() return r"
q_params = {'src_id': l_ptr.src_id}
else:
q = "match ({id: {src_id}})-[r]->({id: {dst_id}}) return r"
q_params = {'src_id': l_ptr.src_id, 'dst_id': l_ptr.dst_id}
self.add_statement(q, q_params)
@staticmethod
def init_from_link_ptr(l_ptr):
return DBO_load_link_set([l_ptr])
@staticmethod
def init_from_link_ptr_set(l_ptr_set):
return DBO_load_link_set(l_ptr_set)
class DBO_match_link_id_set(DB_op):
def __init__(self, filter_label=None, filter_attr_map={}):
"""
load an id-set of links
@param filter_label: link type filter
@param filter_attr_map: is a filter_key to filter_value_set map of
attributes to match link properties against
@return: a set of loaded link ids
"""
super(DBO_match_link_id_set, self).__init__()
q_arr = ['match ()-[r{filter_label} {filter_attr}]->()',
'return id(r)'
]
q = ' '.join(q_arr)
q = cfmt(q, filter_label="" if not filter_label else ":" + filter_label)
q = cfmt(q, filter_attr=db_util.gen_clause_attr_filter_from_filter_attr_map(filter_attr_map))
q_params = {k: v[0] for (k, v) in filter_attr_map.items()} # pass on only first value from each value set
self.add_statement(q, q_params)
class DBO_rm_node_set(DB_op):
def __init__(self, id_set, rm_links=False):
"""
remove node set
"""
assert len(id_set) > 0, __name__ + ': empty id set'
super(DBO_rm_node_set, self).__init__()
if rm_links:
q_arr = ['match (n)',
'where n.id in {id_set}',
'optional match (n)-[r]-()',
'delete n,r',
'return {id_set}'
]
else:
q_arr = ['match (n)',
'where n.id in {id_set}',
'delete n',
'return {id_set}'
]
q = ' '.join(q_arr)
q_params = {'id_set': id_set}
self.add_statement(q, q_params)
class DBO_rm_link_set(DB_op):
def __init__(self, id_set):
"""
remove link set
[!] when removing as a result of node removal, use DBO_rm_node_set
along with rm_links=True
"""
assert len(id_set) > 0, __name__ + ': empty id set'
super(DBO_rm_link_set, self).__init__()
q_arr = ['match ()-[r]->()',
'where r.id in {id_set}',
'delete r',
'return {id_set}'
]
q = ' '.join(q_arr)
q_params = {'id_set': id_set}
self.add_statement(q, q_params)
class DBO_rz_clone(DB_op):
def __init__(self, filter_label=None, limit=128):
"""
clone rhizi
@return: a dict: {'node_set': n_set,
'link_set': l_set }
where l_set is a list of (src.id, dst.id, link) tuples
"""
super(DBO_rz_clone, self).__init__()
self.limit = limit
self.skip = 0
q_arr = ['match (n)' if not filter_label else 'match (n:%s)' % (filter_label),
'optional match (n)-[r]->(m)',
'with n,r,m',
'order by n.id',
'skip %d' % (self.skip),
'limit %d' % (self.limit),
'return n,labels(n),collect([m.id, r, type(r)])']
q = ' '.join(q_arr)
self.add_statement(q)
def process_result_set(self):
ret_n_set = []
ret_l_set = []
for _, _, row_set in self:
for row in row_set:
n, n_lbl_set, l_set = row.items() # see query return statement
# reconstruct nodes
assert None != n['id']
n['__label_set'] = n_lbl_set
ret_n_set.append(n)
# reconstruct links from link tuples
for l_tuple in l_set:
assert 3 == len(l_tuple) # see query return statement
if None == l_tuple[0]: # check if link dst is None
# as link matching is optional, collect may yield empty sets
continue
l = l_tuple[1]
l['__src_id'] = n['id']
l['__dst_id'] = l_tuple[0]
l['__label_set'] = [l_tuple[2]] # box single value returned by type()
ret_l_set.append(l)
return {'node_set': ret_n_set,
'link_set': ret_l_set }
class DB_Controller:
"""
neo4j DB controller
"""
def __init__(self, config, db_driver_class=None):
self.config = config
if not db_driver_class:
self.db_driver = DB_Driver_REST(self.config.db_base_url)
else:
self.db_driver = db_driver_class()
assert isinstance(self.db_driver, DB_Driver_Base)
def exec_op(self, op):
"""
execute operation within a DB transaction
"""
if isinstance(op, DB_composed_op):
# construct a list comprehension composed of all sup_op statements
for s_op in op.sub_op_set:
self.exec_op(s_op)
return op.process_result_set()
try:
self.db_driver.begin_tx(op)
self.db_driver.exec_statement_set(op)
self.db_driver.commit_tx(op)
ret = op.process_result_set()
log.debug('exec_op:' + op.name + ': return value: ' + str(ret))
return ret
except Exception as e:
# here we watch for IOExecptions, etc - not db errors
# these are returned in the db response itself
log.error(e.message)
log.error(traceback.print_exc())
raise e
def create_db_op(self, f_work, f_cont):
ret = DB_op(f_work, f_cont)
return ret
def exec_cypher_query(self, q):
"""
@deprecated: use DBO_cypher_query
"""
# call post and not db_util.post_neo4j to avoid response key errors
try:
db_util.post(self.config.db_base_url + '/db/data/cypher', {"query" : q})
except Exception as e:
log.error(e.message)
log.error(traceback.print_exc())
raise e
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