3 files changed, 22 insertions, 13 deletions

diff --git a/scripts/model/graph.js b/scripts/model/graph.js
index 6ea6a3e4..26d833e6 100644
--- a/scripts/model/graph.js
+++ b/scripts/model/graph.js
@@ -1,7 +1,7 @@
 "use strict"
 
-define(['signal', 'consts', 'util', 'textanalysis'], function (
-    signal, consts, util, textanalysis) {
+define(['signal', 'consts', 'util', 'textanalysis','model/util', 'rz_api_backend', 'rz_api_mesh'], function (
+    signal, consts, util, textanalysis, model_util, rz_api_backend, rz_api_mesh) {
 
 function Graph(el) {
 
@@ -345,6 +345,7 @@ function Graph(el) {
 
     /**
      * editType:
+     * 
      * @return true if type changed
      */
     this.editType = function(id, state, newtype) {
@@ -438,7 +439,7 @@ function Graph(el) {
     var findNode = function(id, state) {
         for (var i = 0; i < nodes.length; i++) {
             if (nodes[i].id === id || nodes[i].state === state)
-                return nodes[i]
+                return nodes[i];
         };
     }
 
@@ -451,7 +452,7 @@ function Graph(el) {
     }
 
     var findNodes = function(id, state) {
-        //id=id.toLowerCase();
+        // id=id.toLowerCase();
         var foundNodes = [];
         for (var i = 0; i < nodes.length; i++) {
             if ((id && nodes[i].id === id) || (state && nodes[i].state === state))
@@ -463,7 +464,7 @@ function Graph(el) {
     var findNodeIndex = function(id, state) {
         for (var i = 0; i < nodes.length; i++) {
             if ((id && nodes[i].id === id) || (state && nodes[i].state === state))
-                return i
+                return i;
         };
     }
 
@@ -489,7 +490,6 @@ function Graph(el) {
     }
 
     /**
-    /**
      * perform initial DB load from backend
      */
     // @ajax-trans
@@ -610,6 +610,7 @@ function Graph(el) {
     this.links = get_links;
 };
 
-
-    return Graph;
+    return {
+        Graph: Graph,
+    };
 });
diff --git a/scripts/rhizicore.js b/scripts/rhizicore.js
index 2e20edda..f2359382 100644
--- a/scripts/rhizicore.js
+++ b/scripts/rhizicore.js
@@ -2,7 +2,7 @@
 
 define('rhizicore',
 ['jquery', 'd3', 'consts', 'signal', 'util', 'history', 'textanalysis', 'model/graph'],
-function($, d3, consts, signal, util, history, textanalysis, Graph) {
+function($, d3, consts, signal, util, history, textanalysis, model_graph) {
 var History = history.History;
 var addednodes = [];
 
@@ -71,7 +71,7 @@ var initDrawingArea = function () {
 
     var el = document.body;
 
-    graph = new Graph(el);
+    graph = new model_graph.Graph(el);
 
     //Zoom scale behavior in zoom.js
     zoomObject = d3.behavior.zoom().scaleExtent([0.1, 3]).on("zoom", zoom);
@@ -318,6 +318,7 @@ function update(no_relayout) {
 
     force.nodes(graph.nodes())
         .links(graph.links())
+
     if (no_relayout) {
         // XXX If we are stopped we need to update the text of the links at least,
         // and this is the simplest way
@@ -674,6 +675,9 @@ function customColor(type) {
         case "bubble":
             color = "rgba(0,0,0,0.2)";
             break;
+        default:
+            size = '#080808';
+            break;
     }
     return color;
 }
@@ -719,6 +723,9 @@ function expand(obj){
     obj.size = Math.max(obj.savesize, obj.value.length);
 }
 
+window.graph = graph;
+window.force = force;
+
 return {
     expand: expand,
     graph: graph,
diff --git a/scripts/textanalysis.js b/scripts/textanalysis.js
index dc9d1303..e911adf6 100644
--- a/scripts/textanalysis.js
+++ b/scripts/textanalysis.js
@@ -1,6 +1,6 @@
 "use strict";
 
-define('textanalysis', [], function() {
+define('textanalysis', ['model/util', 'model/diff'], function(model_util, model_diff) {
 var typeindex = 0;
 var nodetypes = ["person", "project", "skill", "deliverable", "objective"];
 var typeStack = [];
@@ -379,6 +379,7 @@ var textAnalyser = function (newtext, finalize) {
                 function (link) {
                     return [link.sourceName, link.targetName];
                 }));
+
         var k, n, l;
         if (comp.graph_same && !finalize) {
             if (comp.old_name && comp.new_name) {
@@ -389,7 +390,7 @@ var textAnalyser = function (newtext, finalize) {
                 graph.addLinkByName(l.sourceName, l.targetName, l.name, l.state, ret.drop_conjugator_links);
             }
         } else {
-            //REINITIALISE GRAPH (DUMB BUT IT WORKS)
+            // REINITIALISE GRAPH (DUMB BUT IT WORKS)
             graph.removeNodes("temp");
             graph.removeLinks("temp");
             for (k in ret.nodes) {
@@ -418,7 +419,7 @@ var textAnalyser = function (newtext, finalize) {
             graph.commit_diff_set(diff_set);
         }
 
-        //UPDATE GRAPH ONCE
+        // UPDATE GRAPH ONCE
         graph.update(!finalize && comp.graph_same);
     };